Yr Athro Peter Ghazal

2023

• Hamilton, F., Pedersen, K. M., Ghazal, P., Nordestgaard, B. G. and Smith, G. D. 2023. Low levels of small HDL particles predict but do not influence risk of sepsis. Critical Care 27, article number: 389. (10.1186/s13054-023-04589-1)
• Burton, R. J. et al. 2023. Conventional and unconventional T cell responses contribute to the prediction of clinical outcome and causative bacterial pathogen in sepsis patients. [Online]. medRxiv: Cold Spring Harbor Laboratory. (10.1101/2023.09.13.23295490v1) Available at: https://www.medrxiv.org/content/10.1101/2023.09.13.23295490v1
• Hamilton, F., Mitchell, R., Ghazal, P. and Timpson, N. 2023. Phenotypic associations with the HMOX1 GT(n) repeat in European populations. American Journal of Epidemiology, article number: kwad154. (10.1093/aje/kwad154)
• Honeyford, K. et al. 2023. Prevalence of electronic screening for sepsis in National Health Service acute hospitals in England. BMJ Health & Care Informatics 30, article number: e100743. (10.1136/bmjhci-2023-100743)
• Parkinson, E. et al. 2023. Gene filtering strategies for machine learning guided biomarker discovery using neonatal sepsis RNA-seq data. Frontiers in Genetics 14, article number: 1158352. (10.3389/fgene.2023.1158352)
• Hamilton, F., Mentzer, A. J., Parks, T., Baillie, J. K., Smith, G. D., Ghazal, P. and Timpson, N. J. 2023. Variation in ERAP2 has opposing effects on severe respiratory infection and autoimmune disease. American Journal of Human Genetics 110(4), pp. 691-702. (10.1016/j.ajhg.2023.02.008)
• Oruganti, S. et al. 2023. Immune and metabolic markers for identifying and investigating severe Coronavirus disease and Sepsis in children and young people (pSeP/COVID ChYP study): protocol for a prospective cohort study. BMJ Open 13, article number: e067002. (10.1136/bmjopen-2022-067002)
• Hamilton, F., Mitchell, R., Ahmed, H., Ghazal, P. and Timpson, N. J. 2023. An observational and Mendelian randomisation study on iron status and sepsis. Scientific Reports 13(1), article number: 2867. (10.1038/s41598-023-29641-6)
• Hamilton, F., Mitchell, R. E., Constantinescu, A., Hughes, D., Cunnington, A., Ghazal, P. and Timpson, N. J. 2023. The effect of interleukin-6 signaling on severe malaria: A Mendelian randomization analysis. International Journal of Infectious Diseases 129, pp. 251-259. (10.1016/j.ijid.2023.02.008)
• Minelli, C. et al. 2023. Therapeutic potential of IL6R blockade for the treatment of sepsis and sepsis-related death: A mendelian randomisation study. PLoS Medicine 20(1), article number: e1004174. (10.1371/journal.pmed.1004174)

2022

• Sharma, S., Rodrigues, P. R. S., Zaher, S., Davies, L. C. and Ghazal, P. 2022. Immune-metabolic adaptations in pregnancy: A potential stepping-stone to sepsis. EBioMedicine 86, article number: 104337. (10.1016/j.ebiom.2022.104337)
• Hamilton, F., Mitchell, R., Cunnington, A., Ghazal, P. and Timpson, N. J. 2022. HMOX1 STR polymorphism and malaria: an analysis of a large clinical dataset. Malaria Journal 21(1), article number: 342. (10.1186/s12936-022-04352-x)
• Brailey, P. M. et al. 2022. CD1d-dependent rewiring of lipid metabolism in macrophages regulates innate immune responses. Nature Communications 13, article number: 6723. (10.1038/s41467-022-34532-x)
• Ghazal, P., Rodrigues, P. R., Chakraborty, M., Oruganti, S. and Woolley, T. E. 2022. Corrigendum to "Challenging molecular dogmas in human sepsis using mathematical reasoning" [EBioMedicine 80 (2022) 104031]. EBioMedicine 85, article number: 104331. (10.1016/j.ebiom.2022.104331)
• Sharma, S. et al. 2022. mSep: investigating physiological and immune-metabolic biomarkers in septic and healthy pregnant women to predict feto-maternal immune health – a prospective observational cohort study protocol. BMJ Open 12(9), article number: e066382. (10.1136/bmjopen-2022-066382)
• Milton, R. et al. 2022. Incidence and sociodemographic, living environment and maternal health associations with stillbirth in a tertiary healthcare setting in Kano, Northern Nigeria. Short title: Incidence and factors associated with stillbirth in Kano, Nigeria. BMC Pregnancy and Childbirth 22, article number: 692. (10.1186/s12884-022-04971-x)
• Hamilton, F., Evans, R., Ghazal, P. and MacGowan, A. 2022. Patients with transplantation have reduced mortality in bacteraemia: Analysis of data from a randomised trial. Journal of Infection 85(1), pp. 17-23. (10.1016/j.jinf.2022.05.014)
• Frost, J. N. et al. 2022. Evaluation of perturbed iron-homeostasis in a prospective cohort of patients with COVID-19. Wellcome Open Research 77, article number: 173. (10.12688/wellcomeopenres.17904.1)
• Ghazal, P., Rodrigues, P. R., Chakraborty, M., Oruganti, S. and Woolley, T. E. 2022. Challenging molecular dogmas in human sepsis using mathematical reasoning. EBioMedicine 80, article number: 104031. (10.1016/j.ebiom.2022.104031)
• Mummidi, S., Hamilton, F. W., Somers, J., Mitchell, R. E., Ghazal, P. and Timpson, N. J. 2022. HMOX1 genetic polymorphisms and outcomes in infectious disease: A systematic review. PLoS ONE 17(5), article number: e0267399. (10.1371/journal.pone.0267399)
• Iregbu, K. et al. 2022. Global health systems' data science approach for precision diagnosis of sepsis in early life. The Lancet Infectious Diseases 22(5), pp. E143-E152. (10.1016/S1473-3099(21)00645-9)
• Pattaroni, C. et al. 2022. Early life inter-kingdom interactions shape the immunological environment of the airways. Microbiome 10(1), article number: 34. (10.1186/s40168-021-01201-y)
• Hamilton, F., Evans, R., Ghazal, P. and MacGowan, A. 2022. Time to positivity in bloodstream infection is not a prognostic marker for mortality: analysis of a prospective multicentre randomized control trial. Clinical Microbiology and Infection 28(1), pp. 136.E7-136.E13. (10.1016/j.cmi.2021.05.043)
• Misheva, M. et al. 2022. Oxylipin metabolism is controlled by mitochondrial β-oxidation during bacterial inflammation. Nature Communications 13(1), article number: 139. (10.1038/s41467-021-27766-8)

2021

• Chakraborty, M. et al. 2021. nSeP: immune and metabolic biomarkers for early detection of neonatal sepsis-protocol for a prospective multicohort study. BMJ Open 11(12), article number: e050100. (10.1136/bmjopen-2021-050100)
• Rodrigues, P. R., Picco, N., Morgan, B. P. and Ghazal, P. 2021. Sepsis target validation for repurposing and combining complement and immune checkpoint inhibition therapeutics. Expert Opinion on Drug Discovery 16(5), pp. 537-551. (10.1080/17460441.2021.1851186)

2019

• Perucha, E. et al. 2019. The cholesterol biosynthesis pathway regulates IL-10 expression in human Th1 cells. Nature Communications 10, article number: 498. (10.1038/s41467-019-08332-9)
• Dantoft, W., Robertson, K. A., Watkins, W. J., Strobl, B. and Ghazal, P. 2019. Metabolic regulators Nampt and Sirt6 serially participate in the macrophage interferon antiviral cascade. Frontiers in Microbiology (10.3389/fmicb.2019.00355)

2018

• Bah, S. Y., Forster, T., Dickinson, P., Kampmann, B. and Ghazal, P. 2018. Meta-analysis identification of highly robust and differential immune-metabolic signatures of systemic host response to acute and latent tuberculosis in children and adults. Frontiers in Genetics 9, article number: 457. (10.3389/fgene.2018.00457)

2017

• Renz, H. et al. 2017. The neonatal window of opportunity-early priming for life. Journal of Allergy and Clinical Immunology (10.1016/j.jaci.2017.11.019)
• Dantoft, W. et al. 2017. Genomic programming of human neonatal dendritic cells in congenital systemic and in vitro cytomegalovirus infection reveal plastic and robust immune pathway biology responses. Frontiers in Immunology 8, article number: 1146. (10.3389/fimmu.2017.01146)
• Benson, H. E. et al. 2017. Is systems pharmacology ready to impact upon therapy development? A study on the cholesterol biosynthesis pathway. British Journal of Pharmacology 174(23), pp. 4362-4382. (10.1111/bph.14037)
• Newmark, H., Dantoft, W. and Ghazal, P. 2017. Evolutionary origin of the interferon - Immune metabolic axis: The sterol-Vitamin d link. Frontiers in Immunology 8, article number: 62. (10.3389/fimmu.2017.00062)

2016

• Robertson, K. A. and Ghazal, P. 2016. Interferon control of the sterol metabolic network: bidirectional molecular circuitry-mediating host protection. Frontiers in Immunology 7 (10.3389/fimmu.2016.00634)
• Clement, M. et al. 2016. Cytomegalovirus-specific IL-10-producing CD4+ T cells are governed by type-I IFN-induced IL-27 and promote virus persistence. Plos Pathogens 12(12), article number: e1006050. (10.1371/journal.ppat.1006050)
• Noho-Konteh, F. et al. 2016. Sex-differential non-vaccine-specific immunological effects of diphtheria-tetanus-pertussis and measles vaccination. Clinical Infectious Diseases 63(9), pp. 1213-1226. (10.1093/cid/ciw492)
• Bah, S. Y., Dickinson, P., Forster, T., Kampmann, B. and Ghazal, P. 2016. Immune oxysterols: Role in mycobacterial infection and inflammation. The Journal of Steroid Biochemistry and Molecular Biology 169, pp. 152-163. (10.1016/j.jsbmb.2016.04.015)
• Duffin, R. et al. 2016. Prostaglandin E2 constrains systemic inflammation through an innate lymphoid cell-IL-22 axis. Science 351(6279), pp. 1333-1338. (10.1126/science.aad9903)
• Ploegh, H. L. et al. 2016. An interferon regulated microrna provides broad cell-intrinsic antiviral immunity through multihit host-directed targeting of the sterol pathway. PLoS Biology 14(3), article number: e1002364. (10.1371/journal.pbio.1002364)

2015

• Walsh, P. et al. 2015. Draft genome sequences of six different Staphylococcus epidermidis clones, isolated individually from preterm neonates presenting with sepsis at Edinburgh's Royal Infirmary. Genome Announcements 3(3), pp. e00471-15. (10.1128/genomeA.00471-15)
• Sun, R. et al. 2015. A temporal gate for viral enhancers to co-opt toll-like-receptor transcriptional activation pathways upon acute infection. PLoS Pathogens 11(4), article number: e1004737. (10.1371/journal.ppat.1004737)
• Kotzamanis, K., Angulo, A. and Ghazal, P. 2015. Infection homeostasis: implications for therapeutic and immune programming of metabolism in controlling infection. Medical Microbiology and Immunology 204(3), pp. 395-407. (10.1007/s00430-015-0402-5)
• Lu, H., Talbot, S., Robertson, K. A., Watterson, S., Forster, T., Roy, D. and Ghazal, P. 2015. Rapid proteasomal elimination of 3-hydroxy-3-methylglutaryl-CoA reductase by interferon-Rapid proteasomal elimination of 3-hydroxy-3-methylglutaryl-CoA reductase by interferon-y in primary macrophages requires endogenous 25-hydroxycholesterol synthesis in primary macrophages requires endogenous 25-hydroxycholesterol synthesis. Steroids 99, pp. 219-229. (10.1016/j.steroids.2015.02.022)
• Stack, G. et al. 2015. CD200 receptor restriction of myeloid cell responses antagonizes antiviral immunity and facilitates cytomegalovirus persistence within mucosal tissue. PLoS Pathogens 11(2), article number: e1004641. (10.1371/journal.ppat.1004641)
• O'Driscoll, A., Belogrudov, V., Carroll, J., Kropp, K., Walsh, P., Ghazal, P. and Sleator, R. D. 2015. HBLAST: parallelised sequence similarity - A Hadoop MapReducable basic local alignment search tool. Journal of Biomedical Informatics 54, pp. 58-64. (10.1016/j.jbi.2015.01.008)

2014

• Dickinson, P. et al. 2014. Whole blood gene expression profiling of neonates with confirmed bacterial sepsis. Genomics Data 3, pp. 41-48. (10.1016/j.gdata.2014.11.003)
• Kropp, K. A. et al. 2014. Draft genome sequence of a Staphylococcus aureus isolate taken from the blood of a preterm neonatal blood sepsis patient. Genome Announcements 2(5), pp. e00906-14. (10.1128/genomeA.00906-14)
• Kropp, K. A. et al. 2014. Draft genome sequence of a Pantoea sp. isolated from a preterm neonatal blood sepsis patient. Genome Announcements 2(5), pp. e00904-14. (10.1128/genomeA.00904-14)
• Kropp, K. A. et al. 2014. Draft genome sequence of an Enterococcus faecalis strain isolated from a neonatal blood sepsis patient. Genome Announcements 2(5), pp. e00907-14. (10.1128/genomeA.00907-14)
• Kropp, K. A. et al. 2014. Draft genome sequence of a Serratia marcescens strain isolated from a preterm neonatal blood sepsis patient at the Royal Infirmary, Edinburgh, Scotland, United Kingdom. Genome Announcements 2(5), pp. e00908-14. (10.1128/genomeA.00908-14)
• Kropp, K. A. et al. 2014. Draft genome sequence of a Staphylococcus warneri strain isolated from a preterm neonate blood sepsis patient at the Royal Infirmary, Edinburgh, Scotland. Genome Announcements 2(5), pp. e00877-14. (10.1128/genomeA.00877-14)
• Kropp, K. A. et al. 2014. Draft genome sequence of a Streptococcus agalactiae strain isolated from a preterm neonate blood sepsis patient at the Royal Infirmary, Edinburgh, Scotland. Genome Announcements 2(5), pp. e00875-14. (10.1128/genomeA.00875-14)
• Smith, C. L. et al. 2014. Identification of a human neonatal immune-metabolic network associated with bacterial infection. Nature Communications 5, article number: 4649. (10.1038/ncomms5649)
• Griffiths, S. J. et al. 2014. A loss of function analysis of host factors influencing Vaccinia virus replication by RNA interference. PLoS ONE 9(6), article number: e98431. (10.1371/journal.pone.0098431)
• Rall, G. F., Kropp, K. A., Angulo, A. and Ghazal, P. 2014. Viral enhancer mimicry of host innate-immune promoters. PLoS Pathogens 10(2), pp. e1003804. (10.1371/journal.ppat.1003804)

2013

• Cases, M. et al. 2013. Improving data and knowledge management to better integrate health care and research. Journal of Internal Medicine 274(4), pp. 321-328. (10.1111/joim.12105)
• Trilling, M. et al. 2013. Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis. Nucleic Acids Research 41(17), pp. 8107-8125. (10.1093/nar/gkt589)
• Gao, S. et al. 2013. A systematic analysis of host factors reveals a med23-interferon-λ regulatory axis against herpes simplex virus type 1 replication. PLoS Pathogens 9(8), pp. e1003514. (10.1371/journal.ppat.1003514)
• Ghazal, P., Dickinson, P. and Smith, C. L. 2013. Early life response to infection. Current Opinion in Infectious Diseases 26(3), pp. 213-218. (10.1097/QCO.0b013e32835fb8bf)
• Flanagan, K., Noho-Konteh, F., Ghazal, P. and Dickinson, P. 2013. Transcriptional profiling technology for studying vaccine responses: An untapped goldmine. Methods 60(3), pp. 269-274. (10.1016/j.ymeth.2013.03.032)
• Mazein, A., Watterson, S., Hsieh, W., Griffiths, W. J. and Ghazal, P. 2013. A comprehensive machine-readable view of the mammalian cholesterol biosynthesis pathway. Biochemical Pharmacology 86(1), pp. 56-66. (10.1016/j.bcp.2013.03.021)
• Gibbs, H. C., Sing, G., Armas, J. C. G., Campbell, C. J., Ghazal, P. and Yeh, A. T. 2013. Time-lapse ultrashort pulse microscopy of infection in three-dimensional versus two-dimensional culture environments reveals enhanced extra-chromosomal virus replication compartment formation. Journal of Biomedical Optics 18(3), pp. 31111. (10.1117/1.JBO.18.3.031111)
• Watterson, S. et al. 2013. A model of flux regulation in the cholesterol biosynthesis pathway: Immune mediated graduated flux reduction versus statin-like led stepped flux reduction. Biochimie 95(3), pp. 613-621. (10.1016/j.biochi.2012.05.024)
• Hambleton, S. et al. 2013. STAT2 deficiency and susceptibility to viral illness in humans. Proceedings of the National Academy of Sciences 110(8), article number: 201220098. (10.1073/pnas.1220098110)
• Piotrowski, M. et al. 2013. Exploiting parallel R in the cloud with SPRINT. Methods of Information in Medicine 52(1), pp. 80-90. (10.3414/ME11-02-0039)
• Blanc, M. et al. 2013. The Transcription Factor STAT-1 Couples Macrophage Synthesis of 25-Hydroxycholesterol to the Interferon Antiviral Response. Immunity 38(1), pp. 106-118. (10.1016/j.immuni.2012.11.004)

2012

• Mitchell, L., Sloan, T. M., Mewissen, M., Ghazal, P., Forster, T., Piotrowski, M. and Trew, A. 2012. Parallel classification and feature selection in microarray data using SPRINT. Concurrency and Computation: Practice and Experience 26(4), pp. 854-865. (10.1002/cpe.2928)
• Akman, O. E., Watterson, S., Parton, A., Binns, N., Millar, A. J. and Ghazal, P. 2012. Corrigendum for the paper 'Digital clocks: simple Boolean models can quantitatively describe circadian systems'. Interface 9(77), pp. 3578. (10.1098/rsif.2012.0673)
• Britt, W. J. et al. 2012. Ablation of the regulatory IE1 protein of murine cytomegalovirus alters in vivo pro-inflammatory TNF-alpha production during acute infection. PLoS Pathogens 8(8), pp. e1002901. (10.1371/journal.ppat.1002901)
• Maojo, V. et al. 2012. Nanoinformatics: developing new computing applications for nanomedicine. Computing 94(6), pp. 521-539. (10.1007/s00607-012-0191-2)
• Planas-Iglesias, J. et al. 2012. Extending signaling pathways with protein-Interaction networks. Application to apoptosis. OMICS 16(5), pp. 245-256. (10.1089/omi.2011.0130)
• Corrigan, D. K. et al. 2012. Impedimetric detection of single-stranded PCR products derived from methicillin resistant staphylococcus aureus (MRSA) isolates. Biosensors and Bioelectronics 34(1), pp. 178-184. (10.1016/j.bios.2012.01.040)
• Akman, O. E., Watterson, S., Parton, A., Binns, N., Millar, A. J. and Ghazal, P. 2012. Digital clocks: simple Boolean models can quantitatively describe circadian systems. Interface 9(74), pp. 2365-2382. (10.1098/rsif.2012.0080)
• Damania, B. et al. 2012. Viral Mediated Redirection of NEMO/IKK? to Autophagosomes Curtails the Inflammatory Cascade. PLoS Pathogens 8(2), pp. e1002517. (10.1371/journal.ppat.1002517)
• Ciani, I. et al. 2012. Development of immunosensors for direct detection of three wound infection biomarkers at point of care using electrochemical impedance spectroscopy. Biosensors and Bioelectronics 31(1), pp. 413-418. (10.1016/j.bios.2011.11.004)

2011

• Petrou, S. et al. 2011. Optimization of a parallel permutation testing function for the SPRINT R package. Concurrency and Computation: Practice and Experience 23(17), pp. 2258-2268. (10.1002/cpe.1787)
• Ember, S. W. J. et al. 2011. Fast DNA and protein microarray tests for the diagnosis of hepatitis C virus infection on a single platform. Analytical and Bioanalytical Chemistry 401(8), pp. 2549-2559. (10.1007/s00216-011-5332-5)
• Kropp, K. A. et al. 2011. Reversible inhibition of murine cytomegalovirus replication by gamma interferon (IFN- ) in primary macrophages involves a primed type I IFN-signaling subnetwork for full establishment of an immediate-early antiviral state. Journal of Virology 85(19), pp. 10286-10299. (10.1128/JVI.00373-11)
• Piotrowski, M. et al. 2011. Optimisation and parallelisation of the partitioning around medoids function in R. pp. 707., (10.1109/HPCSim.2011.5999896)
• Giraud, G. et al. 2011. Dielectrophoretic manipulation of ribosomal RNA. Biomicrofluidics 5(2), article number: 24116. (10.1063/1.3604395)
• Engel, P., Pérez-Carmona, N., Albà, M. M., Robertson, K., Ghazal, P. and Angulo, A. 2011. Human cytomegalovirus UL7, a homologue of the SLAM-family receptor CD229, impairs cytokine production. Immunology and Cell Biology 89(7), pp. 753-766. (10.1038/icb.2011.55)
• Mitchell, L., Sloan, T. M., Mewissen, M., Ghazal, P., Forster, T., Piotrowski, M. and Trew, A. S. 2011. A parallel random forest classifier for R. pp. 1., (10.1145/1996023.1996024)
• Lacaze, P. et al. 2011. Temporal profiling of the coding and noncoding murine cytomegalovirus transcriptomes. Journal of Virology 85(12), pp. 6065-6076. (10.1128/JVI.02341-10)
• Loewe, L., Guerriero, M. L., Watterson, S., Moodie, S., Ghazal, P. and Hillston, J. 2011. Translation from the quantified implicit process flow abstraction in SBGN-PD diagrams to Bio-PEPA illustrated on the cholesterol pathway. In: Priami, C. et al. eds. Transactions on Computational Systems Biology XIII. Lecture Notes in Computer Science Germany:, pp. 13-38., (10.1007/978-3-642-19748-2_2)
• Virgin, S. W. et al. 2011. Host defense against viral infection involves interferon mediated down-regulation of sterol biosynthesis. PLoS Biology 9(3), article number: e1000598. (10.1371/journal.pbio.1000598)
• Isern, E., Gustems, M., Messerle, M., Borst, E., Ghazal, P. and Angulo, A. 2011. The activator protein 1 binding motifs within the human cytomegalovirus major immediate-early enhancer are functionally redundant and act in a cooperative manner with the NF- B sites during acute infection. Journal of Virology 85(4), pp. 1732-1746. (10.1128/JVI.01713-10)
• Ghazal, P., Watterson, S., Robertson, K. and Kluth, D. C. 2011. The in silico macrophage: toward a better understanding of inflammatory disease. Genome Medicine 3(1), pp. 4. (10.1186/gm218)

2010

• Schulze, H. et al. 2010. Peptide-tags for enhanced DNA microarray performance. Faraday Discussions 149, pp. 201-210. (10.1039/C005491G)
• Ashrafi, G. H. et al. 2010. Assessment of transcriptomal analysis of varicella-zoster-virus gene expression in patients with and without post-herpetic neuralgia. Virus Genes 41(2), pp. 192-201. (10.1007/s11262-010-0515-2)
• Santhakumar, D. et al. 2010. Combined agonist-antagonist genome-wide functional screening identifies broadly active antiviral microRNAs. Proceedings of the National Academy of Sciences 107(31), pp. 13830-13835. (10.1073/pnas.1008861107)
• McGuinness, C. D. et al. 2010. Base pair mismatch identification with DNA nanoswitch and long lifetime acridine fluorophore. Sensors and Actuators B: Chemical 148(1), pp. 342-346. (10.1016/j.snb.2010.04.047)
• Freeman, T. C., Raza, S., Theocharidis, A. and Ghazal, P. 2010. The mEPN scheme: an intuitive and flexible graphical system for rendering biological pathways. BMC Systems Biology 4(1), article number: 65. (10.1186/1752-0509-4-65)
• Raza, S. et al. 2010. Construction of a large scale integrated map of macrophage pathogen recognition and effector systems. BMC Systems Biology 4(1), article number: 63. (10.1186/1752-0509-4-63)
• Watterson, S. and Ghazal, P. 2010. Use of logic theory in understanding regulatory pathway signaling in response to infection. Future Microbiology 5(2), pp. 163-176. (10.2217/fmb.10.8)
• Khondoker, M. R. et al. 2010. Multi-factorial analysis of class prediction error: estimating optimal number of biomarkers for various classification rules. Journal of Bioinformatics and Computational Biology 8(6), article number: 945. (10.1142/S0219720010005063)

2009

• Giraud, G. et al. 2009. Solution state hybridization detection using time-resolved fluorescence anisotropy of quantum dot-DNA bioconjugates. Chemical Physics Letters 484(4-6), pp. 309-314. (10.1016/j.cplett.2009.11.032)
• McGuinness, C. D. et al. 2009. Detection of single nucleotide polymorphisms using a DNA Holliday junction nanoswitch?a high-throughput fluorescence lifetime assay. Molecular BioSystems 6(2), pp. 386-390. (10.1039/B913455G)
• Kabani, S., Fenn, K., Ross, A., Ivens, A., Smith, T. K., Ghazal, P. and Matthews, K. 2009. Genome-wide expression profiling of in vivo-derived bloodstream parasite stages and dynamic analysis of mRNA alterations during synchronous differentiation in Trypanosoma brucei. BMC Genomics 10(1), article number: 427. (10.1186/1471-2164-10-427)
• Nishimura, M. K. Y. et al. 2009. Bait-and-switch molecular recognition in nucleic acid sensors: Time-resolved fluorescence, single nucleotide polymorphism detection. Presented at: 2009 Symposium on Photonics and Optoelectronics, Wuhan, China, 14-16 August 20092009 Symposium on Photonics and Optoelectronics. IEEE, (10.1109/SOPO.2009.5230114)
• Le Novère, N. et al. 2009. Erratum: The systems biology graphical notation. Nature Biotechnology 27(9), pp. 864-864. (10.1038/nbt0909-864d)
• Lacaze, P. et al. 2009. Combined genome-wide expression profiling and targeted RNA interference in primary mouse macrophages reveals perturbation of transcriptional networks associated with interferon signalling. BMC Genomics 10(1), article number: 372. (10.1186/1471-2164-10-372)
• Novère, N. L. et al. 2009. The systems biology graphical notation. Nature Biotechnology 27(8), pp. 735-741. (10.1038/nbt.1558)
• Birmingham, A. et al. 2009. Statistical methods for analysis of high-throughput RNA interference screens. Nature Methods 6(8), pp. 569-575. (10.1038/nmeth.1351)
• Yu, L., Watterson, S., Marshall, S. and Ghazal, P. 2009. Inference of transition probabilities between the attractors in Boolean networks with perturbation. Presented at: 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, Minneapolis, MN, USA, 17-21 May 20092009 IEEE International Workshop on Genomic Signal Processing and Statistics. IEEE, (10.1109/GENSIPS.2009.5174376)
• Campbell, C. J. et al. 2009. A DNA nanoswitch incorporating the fluorescent base analogue 2-aminopurine detects single nucleotide mismatches in unlabelled targets. Analyst 134(9), pp. 1873-1879. (10.1039/b900325h)
• Horne, A. et al. 2009. Endometrial cysteine-rich secretory protein 3 is inhibited by human chorionic gonadotrophin, and is increased in the decidua of tubal ectopic pregnancy. Molecular Human Reproduction 15(5), pp. 287-294. (10.1093/molehr/gap019)
• Busche, A., Marquardt, A., Bleich, A., Ghazal, P., Angulo, A. and Messerle, M. 2009. The mouse cytomegalovirus immediate-early 1 gene is not required for establishment of latency or for reactivation in the lungs. Journal of Virology 83(9), pp. 4030-4038. (10.1128/JVI.02520-08)
• Giraud, G. et al. 2009. Fluorescence lifetime imaging of quantum dot labeled DNA microarrays. International Journal of Molecular Sciences 10(4), pp. 1930-1941. (10.3390/ijms10041930)
• Grinfeld, E., Ross, A., Forster, T., Ghazal, P. and Kennedy, P. G. E. 2009. Genome-wide reduction in transcriptomal profiles of varicella-zoster virus vaccine strains compared with parental Oka strain using long oligonucleotide microarrays. Virus Genes 38(1), pp. 19-29. (10.1007/s11262-008-0304-3)
• Grinfeld, E., Ross, A., Forster, T., Ghazal, P. and Kennedy, P. G. E. 2009. Genome-wide reduction in transcriptomal profiles of varicella-zoster virus vaccine strains compared with Parental Oka strain using long oligonucleotide microarrays. Virus Genes 38(1), pp. 19-29. (10.1007/s11262-008-0304-3)
• Ghazal, P. 2009. Pathway Biology Approach to Medicine. In: Handbook of research on systems biology applications in medicine. Medical Information Science Reference, pp. 1-10., (10.4018/978-1-60566-076-9.ch001)

2008

• Ferapontova, E. et al. 2008. Electrochemical control of a DNA holliday junction nanoswitch by Mg2+ ions. Biosensors and Bioelectronics 24(3), pp. 422-428. (10.1016/j.bios.2008.04.021)
• Burgess, S. T. et al. 2008. A multiplexed protein microarray for the simultaneous serodiagnosis of human immunodeficiency virus/hepatitis C virus infection and typing of whole blood. Analytical Biochemistry 382(1), pp. 9-15. (10.1016/j.ab.2008.07.017)
• Gustems, M., Busche, A., Messerle, M., Ghazal, P. and Angulo, A. 2008. In Vivo competence of murine cytomegalovirus under the control of the human cytomegalovirus major immediate-early enhancer in the establishment of latency and reactivation. Journal of Virology 82(20), pp. 10302-10307. (10.1128/JVI.01255-08)
• Grzegorczyk, M., Husmeier, D., Edwards, K. D., Ghazal, P. and Millar, A. J. 2008. Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics 24(18), pp. 2071-2078. (10.1093/bioinformatics/btn367)
• Yu, L., Watterson, S., Marshall, S. and Ghazal, P. 2008. Inferring Boolean networks with perturbation from sparse gene expression data: a general model applied to the interferon regulatory network. Molecular BioSystems 4(10), pp. 1024-1030. (10.1039/b804649b)
• Taylor, C. F. et al. 2008. Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nature Biotechnology 26(8), pp. 889-896. (10.1038/nbt.1411)
• Bayne, R. A. L. et al. 2008. Molecular profiling of the human testis reveals stringent pathway-specific regulation of RNA expression following gonadotropin suppression and progestogen treatment. Journal of Andrology 29(4), pp. 389-403. (10.2164/jandrol.107.004168)
• Dolken, L. et al. 2008. High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA 14(9), pp. 1959-1972. (10.1261/rna.1136108)
• Busche, A., Angulo, A., Kay-Jackson, P., Ghazal, P. and Messerle, M. 2008. Phenotypes of major immediate-early gene mutants of mouse cytomegalovirus. Medical Microbiology and Immunology 197(2), pp. 233-240. (10.1007/s00430-008-0076-3)
• Horne, A. W. et al. 2008. Endometrial inhibin/activin β-B subunit expression is related to decidualization and Is reduced in tubal ectopic pregnancy. Journal of Clinical Endocrinology and Metabolism 93(6), pp. 2375-2382. (10.1210/jc.2008-0136)
• Watterson, S., Marshall, S. and Ghazal, P. 2008. Logic models of pathway biology. Drug Discovery Today 13(9-10), pp. 447-456. (10.1016/j.drudis.2008.03.019)
• Raza, S., Robertson, K. A., Lacaze, P. A., Page, D., Enright, A. J., Ghazal, P. and Freeman, T. C. 2008. A logic-based diagram of signalling pathways central to macrophage activation. BMC Systems Biology 2(1), article number: 36. (10.1186/1752-0509-2-36)
• Papadia, S. et al. 2008. Synaptic NMDA receptor activity boosts intrinsic antioxidant defenses. Nature Neuroscience 11(4), pp. 476-487. (10.1038/nn2071)
• O'Looney, N. et al. 2008. Evaluation of a protein microarray method for immune-typing erythrocytes in whole blood. Journal of Immunoassay and Immunochemistry 29(2), pp. 197-209. (10.1080/15321810801888530)
• Mountford, C. P. et al. 2008. Molecular recognition with DNA nanoswitches: effects of single base mutations on structure. Journal of Physical Chemistry B 112(8), pp. 2439-2444. (10.1021/jp073817o)
• Cheung, G. Y., Dickinson, P., Sing, G., Craigon, M., Ghazal, P., Parton, R. and Coote, J. G. 2008. Transcriptional responses of murine macrophages to the adenylate cyclase toxin of Bordetella pertussis. Microbial Pathogenesis 44(1), pp. 61-70. (10.1016/j.micpath.2007.08.007)

2007

• Buck, A. H., Santoyo-Lopez, J., Robertson, K. A., Kumar, D. S., Reczko, M. and Ghazal, P. 2007. Discrete clusters of virus-encoded microRNAs are associated with complementary strands of the genome and the 7.2-kilobase stable intron in murine cytomegalovirus. Journal of Virology 81(24), pp. 13761-13770. (10.1128/JVI.01290-07)
• Smith, C. L. et al. 2007. Quantitative assessment of human whole blood RNA as a potential biomarker for infectious disease. Analyst 132(12), pp. 1200-1209. (10.1039/b707122c)
• Buck, A. H. et al. 2007. DNA Nanoswitch as a Biosensor. Analytical Chemistry 79(12), pp. 4724-4728. (10.1021/ac070251r)
• Ferapontova, E. et al. 2007. Electrochemical deposition of Zn on TiN microelectrode arrays for microanodes. Electrochemistry Communications 9(2), pp. 303-309. (10.1016/j.elecom.2006.09.005)
• Glasbey, C. A., Forster, T. and Ghazal, P. 2007. Estimation of expression levels in spotted microarrays with saturated pixels. Statistical Applications in Genetics and Molecular Biology 6(1) (10.2202/1544-6115.1244)

2006

• Terry, J. G. et al. 2006. Improved silicon nitride surfaces for next-generation microarrays. Langmuir 22(26), pp. 11400-11404. (10.1021/la060489v)
• Mount, A. et al. 2006. The stability and characteristics of a DNA Holliday junction switch. Biophysical Chemistry 124(3), pp. 214-221. (10.1016/j.bpc.2006.03.020)
• Sorokin, A., Paliy, K., Selkov, A., Demin, O. V., Dronov, S., Ghazal, P. and Goryanin, I. 2006. The pathway editor: a tool for managing complex biological networks. Ibm Journal of Research and Development 50(6), pp. 561-573. (10.1147/rd.506.0561)
• Mountford, C. P. et al. 2006. Time-resolved FRET and FLIM of four-way DNA junctions. Journal of Fluorescence 16(6), pp. 839-845. (10.1007/s10895-006-0125-5)
• Gustems, M., Borst, E., Benedict, C. A., Perez, C., Messerle, M., Ghazal, P. and Angulo, A. 2006. Regulation of the transcription and replication cycle of human cytomegalovirus is insensitive to genetic elimination of the cognate NF- B binding sites in the enhancer. Journal of Virology 80(19), pp. 9899-9904. (10.1128/JVI.00640-06)
• Grimes, G. R., Wen, T. Q., Mewissen, M., Baxter, R. M., Moodie, S., Beattie, J. S. and Ghazal, P. 2006. PDQ Wizard: automated prioritization and characterization of gene and protein lists using biomedical literature. Bioinformatics 22(16), pp. 2055-2057. (10.1093/bioinformatics/btl342)
• Allen, M. J., Forster, T., Schroeder, D. C., Hall, M., Roy, D., Ghazal, P. and Wilson, W. H. 2006. Locus-specific gene expression pattern suggests a unique propagation strategy for a giant algal virus. Journal of Virology 80(15), pp. 7699-7705. (10.1128/JVI.00491-06)
• Critchley, H. O., Robertson, K. A., Forster, T., Henderson, T. A., Williams, A. R. and Ghazal, P. 2006. Gene expression profiling of mid to late secretory phase endometrial biopsies from women with menstrual complaint. American Journal of Obstetrics and Gynecology 195(2), pp. 406-414. (10.1016/j.ajog.2006.05.002)
• Dickinson, P. et al. 2006. Positional characteristics of fluorophores influencing signal output of a DNA nanoswitch. Presented at: Bio Micro and Nanosystems Conference, San Francisco, California, 15-18 January 2006Bio Micro and Nanosystems Conference 2006. United States: Institute of Electrical & Electronics Engineers (IEEE) Inc pp. 3., (10.1109/BMN.2006.330892)
• Aguilar, J., Devi-Rao, G., Rice, M., Sunabe, J., Ghazal, P. and Wagner, E. 2006. Quantitative comparison of the HSV-1 and HSV-2 transcriptomes using DNA microarray analysis. Virology 348(1), pp. 233-241. (10.1016/j.virol.2005.12.036)
• Robb, J. S., Roy, D. J., Ghazal, P., Allan, J. and Petrik, J. 2006. Development of non-agglutination microarray blood grouping. Transfusion Medicine 16(2), pp. 119-129. (10.1111/j.1365-3148.2005.00628.x)
• Campbell, C. J. et al. 2006. Cell interaction microarray for blood phenotyping. Analytical Chemistry 78(6), pp. 1930-1938. (10.1021/ac051651m)
• Vo-Dinh, T. et al. 2006. Surface enhanced Raman spectroscopy (SERS) for the detection of intracellular constituents using gold nanoshells. Presented at: SPIE BiOS, San Jose, California, 21-26 January 2006Proceedings Volume 6099, Plasmonics in Biology and Medicine III; 609905 (2006), Vol. 6099. Society of Photo-optical Instrumentation Engineers, (10.1117/12.646464)
• Yu, L., Marshall, S., Forster, T. and Ghazal, P. 2006. Modelling of macrophage gene expression in the interferon pathway. Presented at: 2006 IEEE International Workshop on Genomic Signal Processing and Statistics, College Station, TX, 28-30 May 20062006 IEEE International Workshop on Genomic Signal Processing and Statistics (IEEE Conference Proceedings). United States: IEEE pp. 45., (10.1109/GENSIPS.2006.353148)

2005

• Beattie, J. et al. 2005. Interdisciplinary integrated research teams in an academic environment., Vol. 1. pp. 328., (10.1109/IEMC.2005.1559145)
• Kennedy, P. G. E., Grinfeld, E., Craigon, M., Vierlinger, K., Roy, D., Forster, T. and Ghazal, P. 2005. Transcriptomal analysis of varicella-zoster virus infection using long oligonucleotide-based microarrays. Journal of General Virology 86(10), pp. 2673. (10.1099/vir.0.80946-0)
• Laghaee, A., Malcolm, C., Hallam, J. and Ghazal, P. 2005. Artificial intelligence and robotics in high throughput post-genomics. Drug Discovery Today 10(18), pp. 1253-1259. (10.1016/S1359-6446(05)03581-6)
• Wilson, W. H. et al. 2005. Complete genome sequence and lytic phase transcription profile of a coccolithovirus. Science 309(5737), pp. 1090-1092. (10.1126/science.1113109)
• Ghazal, P. et al. 2005. Elimination of ie1 Significantly Attenuates Murine Cytomegalovirus Virulence but Does Not Alter Replicative Capacity in Cell Culture. Journal of Virology 79(11), pp. 7182-7194. (10.1128/JVI.79.11.7182-7194.2005)
• Evans, S. A. et al. 2005. Electrodeposition of platinum metal on TiN thin films. Electrochemistry Communications 7(2), pp. 125-129. (10.1016/j.elecom.2004.11.014)

2004

• Karaca, G., Hargett, D., McLean, T. I., Aguilar, J., Ghazal, P., Wagner, E. K. and Bachenheimer, S. L. 2004. Inhibition of the stress-activated kinase, p38, does not affect the virus transcriptional program of herpes simplex virus type 1. Virology 329(1), pp. 142-156. (10.1016/j.virol.2004.08.020)
• Rae, M. T., Niven, D., Forster, T., Lathe, R., Critchley, H. O. D., Ghazal, P. and Hillier, S. G. 2004. Steroid signalling in human ovarian surface epithelial cells: the response to interleukin-1 determined by microarray analysis. Journal of Endocrinology 183(1), pp. 19-28. (10.1677/joe.1.05754)
• Sun, A. et al. 2004. Immediate-early expression of the herpes simplex virus type 1 ICP27 transcript is not critical for efficient replication In vitro or in vivo. Journal of Virology 78(19), pp. 10470. (10.1128/JVI.78.19.10470-10478.2004)
• Martin-Sanchez, F. et al. 2004. Synergy between medical informatics and bioinformatics: facilitating genomic medicine for future health care. Journal of Biomedical Informatics 37(1), pp. 30-42. (10.1016/j.jbi.2003.09.003)
• Ghazal, P. and Beattie, J. 2004. Modular sub-systems approach to predictive biomedicine. Drug Discovery Today: BIOSILICO 2(1), pp. 2-3. (10.1016/S1741-8364(04)02376-5)
• Benedict, C. A. et al. 2004. Neutrality of the Canonical NF- B-Dependent Pathway for Human and Murine Cytomegalovirus Transcription and Replication In Vitro. Journal of Virology 78(2), pp. 741-750. (10.1128/JVI.78.2.741-750.2004)

2003

• Campbell, C. and Ghazal, P. 2003. Molecular signatures for diagnosis of infection: application of microarray technology. Journal of Applied Microbiology 96(1), pp. 18-23. (10.1046/j.1365-2672.2003.02112.x)
• Beattie, J. and Ghazal, P. 2003. Post-genomic technologies ? thinking beyond the hype. Drug Discovery Today 8(20), pp. 909-910. (10.1016/S1359-6446(03)02862-9)
• Forster, T., Roy, D. and Ghazal, P. 2003. Experiments using microarray technology: limitations and standard operating procedures. Journal of Endocrinology 178(2), pp. 195-204. (10.1677/joe.0.1780195)
• Ghazal, P., Messerle, M., Osborn, K. and Angulo, A. 2003. An Essential Role of the Enhancer for Murine Cytomegalovirus In Vivo Growth and Pathogenesis. Journal of Virology 77(5), pp. 3217-3228. (10.1128/JVI.77.5.3217-3228.2003)
• Glasbey, C. and Ghazal, P. 2003. Combinatorial image analysis of DNA microarray features. Bioinformatics 19(2), pp. 194-203. (10.1093/bioinformatics/19.2.194)
• Ebrahimi, B. et al. 2003. Transcriptome profile of murine gammaherpesvirus-68 lytic infection. Journal of General Virology 84(1), pp. 99-109. (10.1099/vir.0.18639-0)
• Von Seggern, D. J. et al. 2003. In vivo transduction of photoreceptors or ciliary body by intravitreal injection of pseudotyped adenoviral vectors. Molecular Therapy 7(1), pp. 27-34. (10.1016/S1525-0016(02)00030-8)

2002

• Yang, W. C., Devi-Rao, G. V., Ghazal, P., Wagner, E. K. and Triezenberg, S. J. 2002. General and specific alterations in programming of global viral gene expression during Infection by VP16 activation-deficient mutants of herpes simplex virus type 1. Journal of Virology 76(24), pp. 12758-12774. (10.1128/JVI.76.24.12758-12774.2002)
• Alcami, A., Ghazal, P. and Yewdell, J. W. 2002. Viruses in control of the immune system: Workshop on molecular mechanisms of immune modulation: lessons from viruses. EMBO reports 3(10), pp. 927-932. (10.1093/embo-reports/kvf200)
• Aguilar, J., Roy, D., Ghazal, P. and Wagner, E. 2002. Dimethyl sulfoxide blocks herpes simplex virus-1 productive infection in vitro acting at different stages with positive cooperativity. Application of micro-array analysis. BMC Infectious Diseases 2(9) (10.1186/1471-2334-2-9)
• Roy, D., Forster, T., McGeever, S., Robertson, K. and Ghazal, P. 2002. Meeting Review: Bioinformatics of Biochips: Accelerating Discovery in Functional Genomics. Comparative and Functional Genomics 3(4), pp. 380-386. (10.1002/cfg.179)
• Wagner, E. K., Garcia Ramirez, J. J., Stingley, S. W., Aguilar, S. A., Buehler, L., Devi-Rao, G. B. and Ghazal, P. 2002. Practical approaches to long oligonucleotide-based DNA microarray: Lessons from herpesviruses. Progress in Nucleic Acid Research and Molecular Biology 71, pp. 445-491. (10.1016/S0079-6603(02)71048-9)

2001

• Ghazal, P. 2001. DNA microarray technology and integrative viral genomics. Drug Discovery Today 6(20), pp. 1046. (10.1016/S1359-6446(01)02001-3)
• Redpath, S., Angulo, A., Gascoigne, N. R. J. and Ghazal, P. 2001. Immune checkpoints in viral latency. Annual Review of Microbiology 55(1), pp. 531-560. (10.1146/annurev.micro.55.1.531)
• Benedict, C. A. et al. 2001. Lymphotoxins and cytomegalovirus cooperatively induce interferon-β, establishing host-virus détente. Immunity 15(4), pp. 617-626. (10.1016/S1074-7613(01)00222-9)
• Früh, K., Simmen, K., Luukkonen, B., Bell, Y. C. and Ghazal, P. 2001. Virogenomics: a novel approach to antiviral drug discovery. Drug Discovery Today 6(12), pp. 621-627. (10.1016/S1359-6446(01)01808-6)
• Redpath, S., Ghazal, P. and Gascoigne, N. R. 2001. Hijacking and exploitation of IL-10 by intracellular pathogens. Trends in Microbiology 9(2), pp. 86-92. (10.1016/S0966-842X(00)01919-3)
• Garcia-Ramirez, J. J., Ruchti, F., Huang, H., Simmen, K., Angulo, A. and Ghazal, P. 2001. Dominance of virus over host factors in cross-species activation of human cytomegalovirus early gene expression. Journal of Virology 75(1), pp. 26-35. (10.1128/JVI.75.1.26-35.2001)

2000

• Angulo, A., Ghazal, P. and Messerle, M. 2000. The major immediate-early gene ie3 of mouse cytomegalovirus is essential for viral growth. Journal of Virology 74(23), pp. 11129-11136. (10.1128/JVI.74.23.11129-11136.2000)
• Monier, K., Armas, J. C. G., Etteldorf, S., Ghazal, P. and Sullivan, K. F. 2000. Annexation of the interchromosomal space during viral infection. Nature Cell Biology 2(9), pp. 661-665. (10.1038/35023615)
• Ghazal, P., García-Ramírez, J., González-Armas, J. C., Kurz, S. and Angulo, A. 2000. Principles of homeostasis in governing virus activation and latency. Immunologic Research 21(2-3), pp. 219-223. (10.1385/IR:21:2-3:219)
• Angulo, A. et al. 2000. Identification of a boundary domain adjacent to the potent human cytomegalovirus enhancer that represses transcription of the divergent UL127 promoter. Journal of Virology 74(6), pp. 2826-2839. (10.1128/JVI.74.6.2826-2839.2000)
• Wang, H., Griffiths, M. N., Burton, D. R. and Ghazal, P. 2000. Rapid antibody responses by low-dose, single-step, dendritic cell-targeted immunization. Proceedings of the National Academy of Sciences 97(2), pp. 847-852. (10.1073/pnas.97.2.847)
• Ghazal, P., González Armas, J. C., García-Ramírez, J. J., Kurz, S. and Angulo, A. 2000. Viruses: Hostages to the Cell. Virology 275(2), pp. 233-237. (10.1006/viro.2000.0553)
• Stingley, S. W., Ramirez, J. J. G., Aguilar, S. A., Simmen, K., Sandri-Goldin, R. M., Ghazal, P. and Wagner, E. K. 2000. Global analysis of herpes simplex virus type 1 transcription using an oligonucleotide-based DNA microarray. Journal of Virology 74(21), pp. 9916-9927. (10.1128/JVI.74.21.9916-9927.2000)

1999

• Preckel, T. et al. 1999. Impaired immunoproteasome assembly and immune responses in PA28/ mice. Science 286(5447), pp. 2162-2165. (10.1126/science.286.5447.2162)
• Kanakaraj, P. et al. 1999. DefectiveiInterleukin (IL)-18 - mediated natural killer and T helper cell type 1 responses in IL-1 receptor-associated kinase (IRAK)-deficient mice. Journal of Experimental Medicine 189(7), pp. 1129-1129. (10.1084/jem.189.7.1129)
• Lee, K. J., Angulo, A., Ghazal, P. and Janda, K. D. 1999. Soluble-polymer supported synthesis of a prostanoid library: Identification of antiviral activity. Organic Letters 1(11), pp. 1859-1862. (10.1021/ol991130j)
• Dickinson, L. A., Trauger, J. W., Baird, E. E., Ghazal, P., Dervan, P. B. and Gottesfeld, J. M. 1999. Anti-repression of RNA polymerase II transcription by pyrrole−imidazole polyamides. Biochemistry 38(33), pp. 10801-10807. (10.1021/bi9912847)

1998

• LeBlanc, J. F., McLane, K. E., Parren, P. W. H. I., Burton, D. R. and Ghazal, P. 1998. Recognition properties of a sequence-specific DNA binding antibody. Biochemistry 37(17), pp. 6015-6022. (10.1021/bi9730792)

1996

• Ahn, K., Angulo, A., Ghazal, P., Peterson, P. A., Yang, Y. and Fruh, K. 1996. Human cytomegalovirus inhibits antigen presentation by a sequential multistep process. Proceedings of the National Academy of Sciences 93(20), pp. 10990-10995. (10.1073/pnas.93.20.10990)
• Angulo, A., Suto, C., Heyman, R. A. and Ghazal, P. 1996. Characterization of the sequences of the human cytomegalovirus enhancer that mediate differential regulation by natural and synthetic retinoids. Molecular Endocrinology -Baltimore- 10(7), pp. 781-793. (10.1210/me.10.7.781)
• Lee, G., Wu, J., Luu, P., Ghazal, P. and Flores, O. 1996. Inhibition of the association of RNA polymerase II with the preinitiation complex by a viral transcriptional repressor.. Proceedings of the National Academy of Sciences 93(6), pp. 2570-2575. (10.1073/pnas.93.6.2570)

1995

• McLane, K. E., Burton, D. R. and Ghazal, P. 1995. Transplantation of a 17-amino acid alpha-helical DNA-binding domain into an antibody molecule confers sequence-dependent DNA recognition. Proceedings of the National Academy of Sciences of the United States of America 92(11), pp. 5214-5218. (10.1073/pnas.92.11.5214)

1994

• Barbas, S. M., Ghazal, P., Barbas, C. F. and Burton, D. R. 1994. Recognition of DNA by synthetic antibodies. Journal of the American Chemical Society 116(5), pp. 2161-2162. (10.1021/ja00084a073)

1992

• Ghazal, P. and Nelson, J. A. 1992. Interactions between cytomegalovirus immediate-early proteins and the long terminal repeat of human immunodeficiency virus. Reviews in Medical Virology 3(1), pp. 47-55. (10.1002/rmv.1980030107)
• Ghazal, P., DeMattei, C., Giulietti, E., Kliewer, S. A., Umesono, K. and Evans, R. M. 1992. Retinoic acid receptors initiate induction of the cytomegalovirus enhancer in embryonal cells.. Proceedings of the National Academy of Sciences 89(16), pp. 7630-7634. (10.1073/pnas.89.16.7630)
• Baracchini, E., Glezer, E., Fish, K., Stenberg, R. M., Nelson, J. A. and Ghazal, P. 1992. An isoform variant of the cytomegalovirus immediate-early auto repressor functions as a transcriptional activator. Virology 188(2), pp. 518-529. (10.1016/0042-6822(92)90506-K)

1990

• Nelson, J. . A., Ghazal, P. and Wiley, C. A. 1990. Role of opportunistic viral infections in AIDS. AIDS 4(1), pp. 1-10. (10.1097/00002030-199001000-00001)
• Ghazal, P., Lubon, H., Reynolds-Kohler, C., Hennighausen, L. and Nelson, J. A. 1990. Interactions between cellular regulatory proteins and a unique sequence region in the human cytomegalovirus major immediate-early promoter. Virology 174(1), pp. 18-25. (10.1016/0042-6822(90)90049-W)

1989

• Al-Shawi, R., Ghazal, P., Clark, A. J. and Bishop, J. O. 1989. Intraspecific evolution of a gene family coding for urinary proteins. Journal of Molecular Evolution 29(4), pp. 302-313. (10.1007/BF02103618)

1987

• Ghazal, P., Lubon, H., Fleckenstein, B. and Hennighausen, L. 1987. Binding of transcription factors and creation of a large nucleoprotein complex on the human cytomegalovirus enhancer. Proceedings of the National Academy of Sciences 84(11), pp. 3658-3662. (10.1073/pnas.84.11.3658)