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Dr Damian Farnell

(he/him)

Academic and research staff

School of Dentistry

Overview

Job Title: Reader of Applied Mathematics

Work Address: School of Dentistry, Cardiff University, Cardiff CF14 4XY, Wales, United Kingdom

Research Interests: Biostatistics and Data Science; Medical Imaging; Image and Signal Analysis; Deep Learning & AI; Crime and Violence Research; Quantum Many-Body Theory & Quantum Magnetism; Numerical Biosimulations

Chair: Dental School Research Ethics Committee. 

Published Books:

   

Click on the images above for links to the publisher's websites for these books. 

Other Books:

  1. Violence in England and Wales in 2016: An accident and emergency perspective. V. Sivarajasingam, D.J.J. Farnell, S. Moore, N. Page, and J. Shepherd (2018) (ISBN: 978-1-9995878-0-2)
  2. Coupled Cluster Method Theories of Quantum Magnetism. R.F. Bishop, P.H.Y. Li, R. Zinke, and D.J.J. Farnell. Book accepted for publication as a volume in the Springer Series: Solid State Science.

Publication

2024

2023

2022

2021

2020

2019

2018

2017

2016

2015

2014

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2012

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Articles

Book sections

Books

Conferences

Monographs

Research

ARIA Dataset

Automated Retinal Image Analysis (ARIA)

The ARIA dataset is collection of retinal images collected as part of the Automated Retinal Image Analysis (ARIA) project at St. Paul’s Eye Unit, Liverpool, UK (2004 -2006) by myself and my team of photographers. Subjects were adult males and females in three broad groups: healthy (control group), age-related macular degeneration (AMD), and diabetic. (Available on demand.)

3D Surface Imaging & Shape Modelling

Multilevel multivariate multiple regression code (e.g., mPLSR) to model (in MATLAB) how the competing the effects of sex, age, genes, BMI, environment, etc. affect facial shape and to investigate facial dynamics. This research was used to explore facial changes in school children from 11 to 18 years old. It showed also that there are seven phases to a smile! 
3D image capture (white dots) via a 3DMD camera. Model (blue dots and lines) via multilevel functional PCA code developed by DJJF. This work has been supported by travel funding from the London Mathematical Society (LMS) and the "Taith" International Exchange Programme. 

Coupled Cluster Method (CCM)

The CCM is a powerful, accurate, and versatile method of quantum many-body theory. Click here to access a high-order CCM code for lattice quantum spin systems at T = 0 that has been develped by myself and Dr. Joerg Schulenburg (Otto-von-Guericke University Magdeburg, Germany)

Eye Tracking and Patient Information Leaf Design

In a study that we ran at Cardiff University, eye tracking supported free-text comments that showed the importantance of use of images to convey complex information. Fixation times on specific questions were higher for those subjects that were answered correctly in the quiz, although this effect was generally not significant (P > 0.05). 
Image capture via a Tobii Pro Nano. This research was supported by an Innovation Grant from the Institute of Physics and Engineering in Medicine (IPEM).

Improving Bruise Evidence & Pathways for Victims of Violence

DermLite Lumio GL dermatoscope. Another grant application, recently submitted to the MRC, will focus on the development of a complex intervention to improve pathways after bruise detection.

We were recipients in Dec. 2023 of a seedcorn grant from the Security, Crime and Intelligence Innovation Institute (SCIII) at Cardiff University for a study using DermLite dematoscopes to investigate bruising across a varieties of skin tones. Lead applicant: Dr. Sam Evans. This follows on also from Dr. Evans's PhD on bruise imaging and the analysis of paediatric reporting procedures for measuring and recording bruises.  

COVID Bereavement Study

This national study aims to investigate the grief experiences, support needs and use of bereavement support by people bereaved during the pandemic in the UK, and the adaptations, challenges and innovation involved in delivering bereavement support. It is being conducted by a team of researchers at Cardiff University and the University of Bristol, with funding from UKRI via the Economic and Social Research Council.

For more information, please see the study website: www.covidbereavement.com. See also the following TV news interviews with Dr. Lucy Selman: ITV News https://youtu.be/Z5hDtmEkrnM & Sky News https://youtu.be/02MWuVs3PMM.

Teaching

  • DET031 Research Methods (Postgraduate students) Module leader (2014-present).
  • Postgraduate Dental Professionalism (Postgraduate students) Module leader (2017-2021).
  • Citing and Referencing (Plagiarism) Training (Postgraduate students).
  • 2.5-hour session on literature reviews and systematic review (Postgraduate orthodontics students; 2014-present).
  • Academic Tutor (2nd-year dental undergraduate students).
  • Assessor of 2nd-year poster presentations and 3rd-year oral presentations in the school of dentistry (2014-2022).
  • Masters of Orthodontics Student Research Project Supervision (2014-present).

Biography

Overview

I always enjoyed the practical side of mathematics, for example, during my PhD on quantum magnetism. Indeed, I continue to provide guidance and continuing support for my “Coupled Cluster Method” (CCM) code in this field. In 2001, my primary focus moved to medical research, where I use mathematical and computational methods to improve patient outcomes and experiences. I have worked at three hospitals in the UK (Royal Liverpool, Christie Hospital Manchester, and University Hospital Wales (UHW)). In 2014, I was appointed lecturer of medical statistics in the School of Dentistry at Cardiff University / UHW. I have a wide breadth of activity, especially in terms of research support within the school.

Honours and awards

  • Finalists for the ESRC Celebrating Impact Prize 2023 (part of the ESRC Festival of Social Science) for the COVID bereavement study. Entrants: Dr Emily Harrop, Cardiff University; Dr Lucy Selman, University of Bristol. (Dr. Renata Medeiros Mirra and I provided research design guidance and statistical analyses for this project.)  www.ukri.org/who-we-are/how-we-are-doing/research-outcomes-and-impact/esrc/ 
  • Most Engaging Staff Member in the Enriching Student Life Award: (nominated) Cardiff University Students Union (March 2023).
  • Fellow of the Higher Education Academy (FHEA) (awarded September 2021).
  • Jesse H. Shera Award for Distinguished Published Research (2018) from the Research Round Table of the American Library Association for a systematic review of information literacy programs in higher education: Effects of face-to-face, online and blended formats on student skills and views.
  • ESE Wladimir Adlivankine Research Prize, European Society of Endodontology (2017) for a paper on “Efficacy of irrigant activation techniques in removing intracanal smear layer and debris from mature permanent teeth: a systematic review & meta-analysis”.
  • Poster prize awarded at the 5045 Wilhelm und Else Heraeus-Seminar (2012) for a poster on the “Ground-state phase structure of the spin-1/2 anisotropic planar pyrochlore model”.

Professional memberships

  • Fellow of the Higher Education Academy (www.advance-he.ac.uk) (FHEA)
  • Institute of Physics (www.iop.org) (MInstP)
  • Institute of Physics and Engineering in Medicine (www.ipem.ac.uk) (MIPEM)
  • London Mathematical Society (www.lms.ac.uk)

Academic positions

  • Reader of Applied Mathematics (From 2023); Senior Lecturer of Applied Mathematics (2017-2023); Lecturer of Medical Statistics (2014-2017): School of Dentistry, Cardiff University.
  • Senior Lecturer of Mathematics (2011-2014): Division of Mathematics and Statistics, University of South Wales.
  • Research Statistician: Health Methodology Research Group, University of Manchester, (2009-2011); Academic Department of Radiation Oncology (ADRO), the Christie Hospital, University of Manchester (2007-2009).
  • Lecturer in Ophthalmic Imaging (2003-2006): St. Paul’s Eye Unit, Royal Liverpool University Hospital Trust & University of Liverpool.
  • Post-Doctoral Research Associate (1995-2003): Imaging Science and Biomedical Engineering (ISBE), University of Manchester; School of Mechanical Engineering, University of Leeds, UK. Universities of Manchester, UK; Ludwig Maximillian’s University, Munich, Germany; University of Cologne, Germany.

Speaking engagements

Since 2017:

  • Image Analysis of Bruises in Child Maltreatment. S.T Evans, D.J.J. Farnell, & A. Carson-Stevens. Oral Presentation by Dr. Sam Evans at the 17th International Conference of the European Scientific Association on Residential and Family Care for Children and Adolescents (EUSARF). DOI: 10.13140/RG.2.2.25097.62564
  • The Coupled Cluster Method Applied to Quantum Magnetism. Invited Oral Presentation by D.J.J. Farnell from Dr Ioannis Rousochatzakis, School of Physics, Loughborough University (Feb. 2023). DOI: 10.13140/RG.2.2.20904.96006
  • 3D Facial Surface Imaging in Dentistry and Beyond. Poster at Medical Image Understanding and Analysis (MIUA).  July 2022. (www.researchgate.net/publication/361764525_3D_Facial_Surface_Imaging_in_Dentistry_and_Beyond)
  • An Overview of the Dental Data Science Research Group. Presentation by D.J.J. Farnell at the R&D day for the school of dentistry at Cardiff University. May 2022.
  • Orthodontics and 3D Imaging & Multivariate Statistical Models of Shape. Oral “vlunch” presentation (online via MS Teams) presentation by D.J.J. Farnell to the visual computing research group, school of computer science and informatics, Cardiff University. January 2021)
  • Analysis of the Blue Book Records. Oral presentation (online via Zoom) at Burwalls: For Teachers of Medical Statistics. (Co-organiser of this meeting.) July 2020.
  • Multilevel Models of Age-Related Changes in Facial Shape in Adolescents. Poster presentation by D.J.J. Farnell at the University Hospital Wales, R&D Conference. October 2019. Cardiff City Stadium.
  • Quantum Magnetism. Informal presentation given to members of the frustrated magnetism group, School of Physics and Astronomy, Cardiff University. October 2019.
  • Multilevel Models of Age-Related Changes in Facial Shape in Adolescents. Poster presentation by D.J.J. Farnell at the British Society for Oral and Dental Research (BSODR) annual meeting. September 2019.
  • Multilevel Models of Age-Related Changes in Facial Shape in Adolescents. Oral presentation by D.J.J. Farnell at the Medical Image Understanding and Analysis (MIUA) July 2019.
  • The Use of Flipped Learning in Teaching a Postgraduate Research Methods Module: The Pros and Cons. Dr Damian Farnell. Burwalls: For Teachers of Medical Statistics. University of East Anglia (8th-10th, July 2019). Oral Presentation by D.J.J. Farnell.
  • Multilevel Principal Components Analysis (mPCA) of Facial Shape and Image Texture. Invited Oral Presentation by D.J.J. Farnell, KU Leuven, Belgium (Friday 3rd May 2019).
  • Flipped learning – experiencing the pros and cons for inverted learning. Dr DJJ Farnell and Mrs R Jones. Association of Science Educators in Dentistry (ASEID), Cardiff University (April 2019).
  • What’s in a Smile? Initial Results of Multilevel Principal Components Analysis of Facial Shape and Image Texture. Oral presentation by D.J.J. Farnell at the Medical Image Understanding and Analysis (MIUA) July 2018.
  • What’s in a Smile? Multilevel Models of Facial Shape and Appearance. Dental School R&D day, Cardiff University (May 2017). Oral Presentation by D.J.J. Farnell.
  • Emergence of magnetic order in kagome antiferromagnets: The role of next-nearest-neighbor bonds Johannes Richter, Patrick Müller, Oliver Götze, Damian Farnell, Heinz-Jürgen Schmidt Strongly Correlated Electron Systems, SCES (July 2017). Poster presentation.
  • Monte Carlo Methods and Teaching Biostatistics. Burwalls: For Teachers of Medical Statistics. (July 2017). http://burwalls.org.uk/wp/?page_id=456. Oral Presentation by D.J.J. Farnell.
  • A systematic review of information literacy programs in higher education: Effects of face-to-face, online and blended formats on student skills and views. Alison L. Weightman, Delyth Morris, Heather Strange, Gillian Hallam, and Damian J.J. Farnell. One-day meeting at Cardiff University “To Tech or Not to Tech” (CUSEIP, July 2017). Lightning presentation and poster by D.J.J. Farnell.
  • Initial Results of Multilevel Principal Components Analysis of Facial Shape, DJJ Farnell, J Galloway, A Zhurov, S Richmond, P Perttiniemi, and V Katic. Poster presentation at the Cardiff and Vale University Health Board R&D Day by D.J.J. Farnell, 13th June 2017. ibid. Poster presentation by D.J.J. Farnell at the Medical Image Understanding and Analysis (MIUA) July 2017.
  • Oral Health Improves, But Inequalities Remain for Children in Wales. Oral presentation by D.J.J. Farnell at the International Association for Dental Research, General Meeting (San Francisco, March 2017).

Committees and reviewing

Dental School Research Ethics Comittee (Chair)

Supervisions

Current supervision

Yahia Khubrani

Yahia Khubrani

Research student

Past projects

  • Lead supervisor for a project on use of photography, cross-polarised imaging, and high-frequency ultra-sound techniques to investigate healing of bruises in children and the classification of bruises (e.g., abusive, or non-abusive). Also, analysis of paediatric reporting procedures for measuring and recording bruises. Cardiff University. PhD awarded (2022).
  • Co-supervisor for a project on investigations using mPCA to understand how ethnicity & sex, maternal smoking and alcohol intake, metabolic differences influence 3D facial shapes in children and adults. Cardiff University. PhD awarded (2021).
  • Co-supervisor for a project on impact of fluoride concentration in water supply on oral health. Cardiff University. PhD awarded (2018). 
  • Co-supervisor for a project on latanoprost induced iris darkening in colour images of the eye for glaucoma patients. University of Liverpool PhD awarded (2006).

Specialisms

  • Applied statistics
  • Biomedical imaging
  • Deep learning
  • Applied mathematics
  • Quantum Many-Body Theory