Dr Nick Kent
Reader
School of Biosciences
- Available for postgraduate supervision
Overview
DNA in cells does not function as a naked double helix but is bound by various structural proteins to form chromatin. The modulation of chromatin structure is a key process in the catalysis and regulation of gene transcription, DNA replication and DNA repair. I use novel next-generation chromatin sequencing techniques to analyse chromatin function in a variety of organisms including humans, plants, flies, yeast and archaea.The aim of my research is to understand basic chromatin biology relevant to human health, crop improvement and the evolution of genome structure. My most recent funding has been from the BBSRC.
Roles
–Module Leader: BI3254 Genes to Genomes
–School Radiation Protection Supervisor
–Genomics Research Hub Lead
–Year 3 Coordinator
Interested in joining my lab as a self-funded post-graduate student or a postdoc/fellow? Please contact me by email.
Publication
2023
- Ofer, S. et al. 2023. DNA-bridging by an archaeal histone variant via a unique tetramerisation interface. Communications Biology 6(1), article number: 968. (10.1038/s42003-023-05348-2)
- Baldwin, A. et al. 2023. Storage of halved strawberry fruits affects aroma, phytochemical content and gene expression, and is affected by pre-harvest factors. Frontiers in Plant Science 14, article number: 1165056. (10.3389/fpls.2023.1165056)
2019
- Harwood, J. C., Kent, N. A., Allen, N. D. and Harwood, A. J. 2019. Nucleosome dynamics of human iPSC during neural differentiation. EMBO reports 20(6), article number: e46960. (10.15252/embr.201846960)
- Lear, B. et al. 2019. De novo transcriptome analysis of peduncle necking in cut Rosa hybrida cultivar 'H30'. Acta Horticulturae 1263, pp. 351-358.
2017
- Pass, D. A., Sornay, E., Marchbank, A., Crawford, M. R., Paszkiewicz, K., Kent, N. A. and Murray, J. A. H. 2017. Genome-wide chromatin mapping with size resolution reveals a dynamic sub-nucleosomal landscape in Arabidopsis. PLoS Genetics 13(9), article number: e1006988. (10.1371/journal.pgen.1006988)
- Platt, J. L., Kent, N. A., Kimmel, A. R. and Harwood, A. J. 2017. Regulation of nucleosome positioning by a CHD Type III chromatin remodeler and its relationship to developmental gene expression in Dictyostelium. Genome Research 27, pp. 591-600. (10.1101/gr.216309.116)
2016
- Gal, C. et al. 2016. Abo1, a conserved bromodomain AAA-ATPase, maintains global nucleosome occupancy and organisation. EMBO reports 17(1), pp. 79-93. (10.15252/embr.201540476)
2015
- Gal, C., Moore, K. M., Paszkiewicz, K., Kent, N. A. and Whitehall, S. K. 2015. The impact of the HIRA histone chaperone upon global nucleosome architecture. Cell Cycle 14(1), pp. 123-134. (10.4161/15384101.2014.967123)
2013
- Maruyama, H. et al. 2013. An alternative beads-on-a-string chromatin architecture in Thermococcus kodakarensis. Embo Reports 14(8), pp. 711-717. (10.1038/embor.2013.94)
2012
- Chambers, A. L., Ormerod, G., Durley, S. C., Sing, T. L., Brown, G. W., Kent, N. A. and Downs, J. A. 2012. The INO80 chromatin remodeling complex prevents polyploidy and maintains normal chromatin structure at centromeres. Genes & Development 26(23), pp. 2590-2603. (10.1101/gad.199976.112)
- Durand-Dubief, M. et al. 2012. SWI/SNF-like chromatin remodeling factor Fun30 supports point centromere function in S. cerevisiae. PLoS Genetics 8(9), article number: e1002974. (10.1371/journal.pgen.1002974)
- Chambers, A. L., Brownlee, P. M., Durley, S. C., Beacham, T., Kent, N. A. and Downs, J. A. 2012. The two different isoforms of the RSC chromatin remodeling complex play distinct roles in DNA damage responses. PLoS ONE 7(2), article number: e32016. (10.1371/journal.pone.0032016)
2010
- Kent, N. A., Adams, S., Moorhouse, A. and Paszkiewicz, K. 2010. Chromatin particle spectrum analysis: A method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing. Nucleic Acids Research 39(5), article number: e26. (10.1093/nar/gkq1183)
2009
- Kent, N. A. 2009. British yeast group meeting. Biochemist e-volution 31(3), pp. 52-53.
- Loney, E. R., Inglis, P. W., Sharp, S., Pryde, F. E., Kent, N. A., Mellor, J. and Louis, E. J. 2009. Repressive and non-repressive chromatin at native telomeres in Saccharomyces cerevisiae. Epigenetics & Chromatin(2), article number: 18. (10.1186/1756-8935-2-18)
2007
- Jones, H. S., Kawauchi, J., Braglia, P., Alen, C. M., Kent, N. A. and Proudfoot, N. J. 2007. RNA polymerase I in yeast transcribes dynamic nucleosomal rDNA. Nature Structural and Molecular Biology Vol 14(2), pp. 123-130. (10.1038/nsmb1199)
- Kent, N. A., Chambers, A. L. and Downs, J. A. 2007. Dual chromatin remodeling roles for RSC during DNA double strand break induction and repair at the yeast MAT locus. Journal of Biological Chemistry 282(38), pp. 27693-27701. (10.1074/jbc.M704707200)
- Sherriff, J. A., Kent, N. A. and Mellor, J. 2007. The Isw2 chromatin-remodeling ATPase cooperates with the Fkh2 transcription factor To repress transcription of the B-type cyclin Gene CLB2. Molecular and Cellular Biology 27(8), pp. 2848-2860. (10.1128/MCB.01798-06)
2004
- Kent, N. A., Eibert, S. M. and Mellor, J. 2004. Cbf1p Is Required for Chromatin Remodeling at Promotor - proximal CACGTG motifs in yeast. The Journal of Biological Chemistry 279(26), pp. 27116 - 27123. (10.1074/jbc.M403818200)
- Ferreiro, A., Powell, N. G., Karabetsou, N., Kent, N. A., Mellor, J. and Waters, R. 2004. Cbf1p modulates chromatin structure, transcription and repair at the Saccharomyces cerevisiae MET16 locus. Nucleic Acids Research 32(5), pp. 1617-1626. (10.1093/nar/gkh324)
- Martinez-Campa, C., Politis, P., Moreau, J., Kent, N. A., Goodall, J., Mellor, J. and Goding, C. R. 2004. Precise nucleosome positioning and the TATA box dictate requirements for the histone H4 tail and the bromodomain factor Bdf1. Molecular Cell 15(1), pp. 69-81. (10.1016/j.molcel.2004.05.022)
2002
- Alen, C., Kent, N. A., Jones, H. S., O'Sullivan, J., Aranda, A. and Proudfoot, N. J. 2002. A role for chromatin remodeling in transcriptional termination by RNA polymerase II. Molecular Cell 10(6), pp. 1441-1452. (10.1016/S1097-2765(02)00778-5)
2001
- Kent, N. A., Karabetsou, N., Politis, P. K. and Mellor, J. 2001. In vivo chromatin remodeling by yeast ISWI homologs Isw1p and Isw2p. Genes and Development 15, pp. 619-626. (10.1101/gad.190301)
Articles
- Ofer, S. et al. 2023. DNA-bridging by an archaeal histone variant via a unique tetramerisation interface. Communications Biology 6(1), article number: 968. (10.1038/s42003-023-05348-2)
- Baldwin, A. et al. 2023. Storage of halved strawberry fruits affects aroma, phytochemical content and gene expression, and is affected by pre-harvest factors. Frontiers in Plant Science 14, article number: 1165056. (10.3389/fpls.2023.1165056)
- Harwood, J. C., Kent, N. A., Allen, N. D. and Harwood, A. J. 2019. Nucleosome dynamics of human iPSC during neural differentiation. EMBO reports 20(6), article number: e46960. (10.15252/embr.201846960)
- Lear, B. et al. 2019. De novo transcriptome analysis of peduncle necking in cut Rosa hybrida cultivar 'H30'. Acta Horticulturae 1263, pp. 351-358.
- Pass, D. A., Sornay, E., Marchbank, A., Crawford, M. R., Paszkiewicz, K., Kent, N. A. and Murray, J. A. H. 2017. Genome-wide chromatin mapping with size resolution reveals a dynamic sub-nucleosomal landscape in Arabidopsis. PLoS Genetics 13(9), article number: e1006988. (10.1371/journal.pgen.1006988)
- Platt, J. L., Kent, N. A., Kimmel, A. R. and Harwood, A. J. 2017. Regulation of nucleosome positioning by a CHD Type III chromatin remodeler and its relationship to developmental gene expression in Dictyostelium. Genome Research 27, pp. 591-600. (10.1101/gr.216309.116)
- Gal, C. et al. 2016. Abo1, a conserved bromodomain AAA-ATPase, maintains global nucleosome occupancy and organisation. EMBO reports 17(1), pp. 79-93. (10.15252/embr.201540476)
- Gal, C., Moore, K. M., Paszkiewicz, K., Kent, N. A. and Whitehall, S. K. 2015. The impact of the HIRA histone chaperone upon global nucleosome architecture. Cell Cycle 14(1), pp. 123-134. (10.4161/15384101.2014.967123)
- Maruyama, H. et al. 2013. An alternative beads-on-a-string chromatin architecture in Thermococcus kodakarensis. Embo Reports 14(8), pp. 711-717. (10.1038/embor.2013.94)
- Chambers, A. L., Ormerod, G., Durley, S. C., Sing, T. L., Brown, G. W., Kent, N. A. and Downs, J. A. 2012. The INO80 chromatin remodeling complex prevents polyploidy and maintains normal chromatin structure at centromeres. Genes & Development 26(23), pp. 2590-2603. (10.1101/gad.199976.112)
- Durand-Dubief, M. et al. 2012. SWI/SNF-like chromatin remodeling factor Fun30 supports point centromere function in S. cerevisiae. PLoS Genetics 8(9), article number: e1002974. (10.1371/journal.pgen.1002974)
- Chambers, A. L., Brownlee, P. M., Durley, S. C., Beacham, T., Kent, N. A. and Downs, J. A. 2012. The two different isoforms of the RSC chromatin remodeling complex play distinct roles in DNA damage responses. PLoS ONE 7(2), article number: e32016. (10.1371/journal.pone.0032016)
- Kent, N. A., Adams, S., Moorhouse, A. and Paszkiewicz, K. 2010. Chromatin particle spectrum analysis: A method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing. Nucleic Acids Research 39(5), article number: e26. (10.1093/nar/gkq1183)
- Kent, N. A. 2009. British yeast group meeting. Biochemist e-volution 31(3), pp. 52-53.
- Loney, E. R., Inglis, P. W., Sharp, S., Pryde, F. E., Kent, N. A., Mellor, J. and Louis, E. J. 2009. Repressive and non-repressive chromatin at native telomeres in Saccharomyces cerevisiae. Epigenetics & Chromatin(2), article number: 18. (10.1186/1756-8935-2-18)
- Jones, H. S., Kawauchi, J., Braglia, P., Alen, C. M., Kent, N. A. and Proudfoot, N. J. 2007. RNA polymerase I in yeast transcribes dynamic nucleosomal rDNA. Nature Structural and Molecular Biology Vol 14(2), pp. 123-130. (10.1038/nsmb1199)
- Kent, N. A., Chambers, A. L. and Downs, J. A. 2007. Dual chromatin remodeling roles for RSC during DNA double strand break induction and repair at the yeast MAT locus. Journal of Biological Chemistry 282(38), pp. 27693-27701. (10.1074/jbc.M704707200)
- Sherriff, J. A., Kent, N. A. and Mellor, J. 2007. The Isw2 chromatin-remodeling ATPase cooperates with the Fkh2 transcription factor To repress transcription of the B-type cyclin Gene CLB2. Molecular and Cellular Biology 27(8), pp. 2848-2860. (10.1128/MCB.01798-06)
- Kent, N. A., Eibert, S. M. and Mellor, J. 2004. Cbf1p Is Required for Chromatin Remodeling at Promotor - proximal CACGTG motifs in yeast. The Journal of Biological Chemistry 279(26), pp. 27116 - 27123. (10.1074/jbc.M403818200)
- Ferreiro, A., Powell, N. G., Karabetsou, N., Kent, N. A., Mellor, J. and Waters, R. 2004. Cbf1p modulates chromatin structure, transcription and repair at the Saccharomyces cerevisiae MET16 locus. Nucleic Acids Research 32(5), pp. 1617-1626. (10.1093/nar/gkh324)
- Martinez-Campa, C., Politis, P., Moreau, J., Kent, N. A., Goodall, J., Mellor, J. and Goding, C. R. 2004. Precise nucleosome positioning and the TATA box dictate requirements for the histone H4 tail and the bromodomain factor Bdf1. Molecular Cell 15(1), pp. 69-81. (10.1016/j.molcel.2004.05.022)
- Alen, C., Kent, N. A., Jones, H. S., O'Sullivan, J., Aranda, A. and Proudfoot, N. J. 2002. A role for chromatin remodeling in transcriptional termination by RNA polymerase II. Molecular Cell 10(6), pp. 1441-1452. (10.1016/S1097-2765(02)00778-5)
- Kent, N. A., Karabetsou, N., Politis, P. K. and Mellor, J. 2001. In vivo chromatin remodeling by yeast ISWI homologs Isw1p and Isw2p. Genes and Development 15, pp. 619-626. (10.1101/gad.190301)
Biography
I received a BSc. (Hons) from the University of East Anglia in 1989, a D.Phil from the University of Oxford in 1994, and became a Fellow of the Higher Education Academy in 2008.
During my doctoral work in Jane Mellor's laboratory in Oxford, I became interested in how the physical packaging of DNA influences gene expression, and developed technology for digesting yeast chromatin with nucleases in order to map chromatin structure which is still used widely today (Kent et al., 1993; Kent and Mellor, 1995). From 1994, I undertook post-doctoral work at Oxford in both the Biochemistry Department (Mellor lab) and the Sir William Dunn School of Pathology (Proudfoot lab), and became a Departmental Lecturer in the Genetics Unit in 2002. During this time in Oxford, I worked on co-activator/repressor complexes which use energy from ATP hydrolysis to remodel chromatin structure, and played a key role in discovering the cellular functions of the ISWI and CHD classes of these enzymes (Kent et al., 2001; Alen et al., 2002, Morillion et al., 2003, Martinez-Campa et al., 2004).
In 2006, I took up a Lectureship at Cardiff University and have since published papers: characterising chromatin environments at the rDNA locus and telomeres (Jones et al., 2007; Loney et al., 2009); dissecting the role of the SWI/SNF class ATPase RSC in chromatin-remodelling during chromosome break formation and repair (Kent et al., 2007; Chambers et al., 2012a); identifying a role for the INO80 class ATPase in centromere function and genome stability (Chambers et al., 2012b). The main focus of my lab is now developing chromatin-SEQ techniques to analyse chromatin structure and function at a genome-wide level (Kent et al., 2011; Durand-Dubief et al., 2012; Platt et al., 2013; Platt et al.,2017). I have continued to explore chromatin remodelling in model organism systems such as fission yeast and Arabidopsis (Gal et al., 2015; Pass et al., 2017) and also human cells (Harwood et al., 2019). I also played a part in the discovery of the novel beads-on-a-string "supernucleosome" architectures now known to be present in archaeal cells (Maruyama et al., 2013; Ofer, S. et al., 2023).
Professional memberships
Fellow of the Higher Education Academy
Contact Details
+44 29208 79036
Sir Martin Evans Building, Room School of Biosciences, The Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AX, Museum Avenue, Cardiff, CF10 3AX